seeker is an R-based wrapper around various command-line tools for fetching and processing sequencing data, especially RNA-seq data, as well as microarray data. Hopefully it helps you get what you’re after, before the day you die.


Sex Inclusion in Transcriptome Studies of Daily Rhythms, Obodo / Outland and Hughey, J Biol Rhythms 2022

The seeker R package: simplified fetching and processing of transcriptome data, Schoenbachler and Hughey, PeerJ 2022